New paper published – Non-structural carbohydrates in woody plants compared among laboratories

Ülo Niinemets and Mari Tobias from our workgroup participated in a pretty straightforward study related to carbohydrate measuring methodologies used in different labs, led by Audrey G. Quentin. A rather ingenious study idea, but some rather pessimistic results…

Full citation: Quentin, A. G., Pinkard, E. A., Ryan, M. G., Tissue, D. T., Baggett, L. S., Adams, H. D.,… Niinemets, Ü.Tobias, M. … & Smith, R. A. (2015). Non-structural carbohydrates in woody plants compared among laboratories. Tree Physiology, tpv073. (link to full text)

How to measure Eucalyptus globulus (image from http://tree-species.blogspot.com.ee/)

Abstract:

Non-structural carbohydrates (NSC) in plant tissue are frequently quantified to make inferences about plant responses to environmental conditions. Laboratories publishing estimates of NSC of woody plants use many different methods to evaluate NSC. We asked whether NSC estimates in the recent literature could be quantitatively compared among studies. We also asked whether any differences among laboratories were related to the extraction and quantification methods used to determine starch and sugar concentrations. These questions were addressed by sending sub-samples collected from five woody plant tissues, which varied in NSC content and chemical composition, to 29 laboratories. Each laboratory analyzed the samples with their laboratory-specific protocols, based on recent publications, to determine concentrations of soluble sugars, starch and their sum, total NSC. Laboratory estimates differed substantially for all samples. For example, estimates for Eucalyptus globulus leaves (EGL) varied from 23 to 116 (mean = 56) mg g−1 for soluble sugars, 6–533 (mean = 94) mg g−1 for starch and 53–649 (mean = 153) mg g−1 for total NSC. Mixed model analysis of variance showed that much of the variability among laboratories was unrelated to the categories we used for extraction and quantification methods (method category R2 = 0.05–0.12 for soluble sugars, 0.10–0.33 for starch and 0.01–0.09 for total NSC). For EGL, the difference between the highest and lowest least squares means for categories in the mixed model analysis was 33 mg g−1 for total NSC, compared with the range of laboratory estimates of 596 mg g−1. Laboratories were reasonably consistent in their ranks of estimates among tissues for starch (r = 0.41–0.91), but less so for total NSC (r = 0.45–0.84) and soluble sugars (r = 0.11–0.83). Our results show that NSC estimates for woody plant tissues cannot be compared among laboratories. The relative changes in NSC between treatments measured within a laboratory may be comparable within and between laboratories, especially for starch. To obtain comparable NSC estimates, we suggest that users can either adopt the reference method given in this publication, or report estimates for a portion of samples using the reference method, and report estimates for a standard reference material. Researchers interested in NSC estimates should work to identify and adopt standard methods.

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One Response to New paper published – Non-structural carbohydrates in woody plants compared among laboratories

  1. Pingback: Our lab´s publications in 2015 | Ülo Niinemets’ Lab

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